Data Preparation
Before starting with CellTune, you’ll just need to organize your multiplexed images and segmentations.
We highly recommend pre-processing your images to clean out background, noise, and artifacts.
You can also optionally prepare a table of initial cell type information (CellTypeTable in the demo data) which can be used for automated landmarking and automated channel selection during cell review.
Compatibility
CellTune supports pyramidal image formats (e.g. ) non-pyramidal image formats, including single TIFF, Support for very large pyramidal formats (e.g., OME-TIFF, QPTIFF, OME-ZARR) and speed improvements have recently been added.